Publication： Journal of Molecular Structure

Date of Publication: 28 February 2021

Authors： Vikas Kumar , Raj Kumar, Shraddha Parate, Sanghwa Yoon, Gihwan Lee, Donghwan Kim, Keun Woo Lee

doi: https://doi.org/10.1016/j.molstruc.2021.130200

ACK1, an intracellular non-receptor tyrosine kinase when abnormally activated and amplified causes numerous sorts of human cancers, therefore, act as a major target of cancer drug development. Currently, there are very small numbers of inhibitors reported for ACK1 inhibition and none of them are in clinical trials. In this study, to identify potential ACK1 inhibitors, a small dataset was prepared from already known inhibitors as a training set for ligand-based pharmacophore model generation using the Hip- Hop algorithm available in the Discovery Studio . Selected pharmacophore hypothesis, Hypo1 displayed the highest rank and consists of five features including two hydrogen bond acceptors (HBA), two-ring aromatic (RA) and one hydrophobic (HYP). Hypo1 was further validated by Receiver Operating Characteristic (ROC) curve and Güner-Henry (GH) approach which give an ROC value of 0.92 and highest GH score of 0.78. Drug-like database was generated from ZINC, ANX, NCI and Princeton database using Lipinski’s rule of five and ADMET descriptors. Validated Hypo1 was used for searching new potential hit compounds from the generated drug-like database. From molecular docking analysis, ten potential inhibitor compounds were selected on the basis of Goldscore > 67.72, the score of reference inhibitor Dasatinib. Furthermore, molecular dynamics simulation study was performed to study the stability of docking conformations. Subsequently, molecular dynamics simulation analyses revealed that the Hit1 and Hit2 compounds have desirable molecular interaction with key residues Thr205 and Ala208 in the hinge region of ACK1 with better binding affinity. Finally, various pharmacokinetic properties over the Hit1 and Hit2 compounds were analyzed using pkCSM tool and it was found that our hit compounds have shown comparable results with reference. Therefore, we propose the Hit1 and Hit2 compounds may be crucial against ACK1 as potential anticancer agents subjected to experimental validation.